R/import_inter-rater_scores.R
import_interrater_scores.RdImports, formats data into proper types and calculates the final reproducibility score.
import_interrater_scores()A [tibble::tibble()] object of reproducibility score notes formatted for use in analysis and manuscript preparation
notes <- import_notes()
pander::pander(head(notes))
#>
#> ----------------------------------------------------------------------------
#> journal abbreviation year contains_page
#> ------------------------------ ---------------------- ------ ---------------
#> Australasian Plant Pathology Australas Plant Path 2014 29
#>
#> Australasian Plant Pathology Australas Plant Path 2013 51
#>
#> Australasian Plant Pathology Australas Plant Path 2020 8
#>
#> Australasian Plant Pathology Australas Plant Path 2017 75
#>
#> Australasian Plant Pathology Australas Plant Path 2017 16
#>
#> Australasian Plant Pathology Australas Plant Path 2018 11
#> ----------------------------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> -------------------------------------------------
#> assignee doi doi_url
#> ---------- ---------------------------- ---------
#> Adam 10.1007/s13313-013-0228-9 #NAME?
#>
#> Adam 10.1007/s13313-012-0178-7 #NAME?
#>
#> Emerson 10.1007/s13313-019-00670-y #NAME?
#>
#> Kaique 10.1007/s13313-017-0465-4 #NAME?
#>
#> Kaique 10.1007/s13313-016-0461-0 #NAME?
#>
#> Kaique 10.1007/s13313-017-0532-x #NAME?
#> -------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> ------------------------------------------------------------------------------
#> comments open repro_inst art_class molecular
#> -------------------------------- ------ ------------ ------------- -----------
#> NA BOTH 2 Applied 0
#>
#> When the article was published BOTH 2 Applied 0
#> I'm not sure that MaxEnt was
#> freely available, however,
#> very recently (1st half 2017)
#> it's become freely available
#>
#> BOTH 2 Fundamental 0
#>
#> NA BOTH 2 Applied 0
#>
#> Original random page number BOTH 2 Fundamental 1
#> not applicable, selected first
#> following plant pathology
#> article
#>
#> NA BOTH 2 Applied 1
#> ------------------------------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> ----------------------------------------------------------------
#> software_cite software_avail comp_mthds_avail data_avail
#> --------------- ---------------- ------------------ ------------
#> 3 1 0 0
#>
#> 1 3 0 3
#>
#> 1 2 0 0
#>
#> 0 0 0 0
#>
#> 1 2 0 3
#>
#> 2 2 0 3
#> ----------------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> ------------------------------------------------------
#> software_used IF_2year IF_5year
#> -------------------------------- ---------- ----------
#> GenStat 1.599 1.708
#>
#> MaxEnt 1.599 1.708
#>
#> MSTATC 1.599 1.708
#>
#> NA 1.599 1.708
#>
#> iPhyClassifier, BioEdit, MEGA 1.599 1.708
#>
#> Sequence Scanner, MEGA, MAFFT, 1.599 1.708
#> MrModeltest, MrBayes, PAUP
#> ------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> -----------------------------------
#> Source: InCites Journal uid
#> Citation Reports, Clarivate
#> Analytics, 2022
#> ----------------------------- -----
#> NA 1
#>
#> NA 2
#>
#> NA 3
#>
#> NA 4
#>
#> NA 5
#>
#> NA 6
#> -----------------------------------
#>