Computational Methods Availability
Test the effect that the journal’s effect on the available of
computational methods. Set up a brms model with journal
(abbreviation
) as the fixed effect and year
and assignee
as random effects. Test the effect that the
journal may have on the availability of data. Base level is set to
Phytopathology, the journal that will be used as the intercept
in the following model.
# import data
rrpp <- import_notes()
# relevel factors for analysis, use Phytopathology as basis for analysis, highest IF
rrpp <-
within(rrpp,
abbreviation <-
relevel(abbreviation, ref = "Phytopathology"))
rrpp <- drop_na(rrpp, comp_mthds_avail)
m_f1 <-
brm(
formula = comp_mthds_avail ~ abbreviation +
(1 | assignee),
data = rrpp,
seed = 27,
prior = priors,
family = cumulative(),
iter = 10000,
control = list(adapt_delta = 0.99)
)
#> Compiling Stan program...
#> Start sampling
summary(m_f1)
#> Family: cumulative
#> Links: mu = logit; disc = identity
#> Formula: comp_mthds_avail ~ abbreviation + (1 | assignee)
#> Data: rrpp (Number of observations: 440)
#> Draws: 4 chains, each with iter = 10000; warmup = 5000; thin = 1;
#> total post-warmup draws = 20000
#>
#> Group-Level Effects:
#> ~assignee (Number of levels: 5)
#> Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sd(Intercept) 6.21 2.71 2.80 13.01 1.00 8634 11916
#>
#> Population-Level Effects:
#> Estimate Est.Error l-95% CI u-95% CI Rhat
#> Intercept[1] 0.16 0.79 -1.37 1.71 1.00
#> Intercept[2] 0.55 0.78 -0.97 2.09 1.00
#> abbreviationAustralasPlantPath -0.14 0.95 -2.02 1.67 1.00
#> abbreviationCanJPlantPathol -0.20 0.92 -2.08 1.56 1.00
#> abbreviationCropProt -0.25 0.89 -2.06 1.48 1.00
#> abbreviationEurJPlantPathol -0.20 0.90 -2.04 1.52 1.00
#> abbreviationForestPathol -0.21 0.92 -2.06 1.52 1.00
#> abbreviationJPhytopathol -0.34 0.86 -2.07 1.28 1.00
#> abbreviationJPlantPathol -0.23 0.91 -2.07 1.49 1.00
#> abbreviationMolPlantMicroIn 0.46 0.84 -1.26 2.05 1.00
#> abbreviationMolPlantPathol -0.28 0.89 -2.06 1.39 1.00
#> abbreviationNematology -0.23 0.91 -2.05 1.52 1.00
#> abbreviationPhysiolMolPlantP -0.25 0.90 -2.07 1.45 1.00
#> abbreviationPhytoparasitica -0.26 0.89 -2.04 1.41 1.00
#> abbreviationPhytopatholMediterr -0.21 0.91 -2.04 1.54 1.00
#> abbreviationPlantDis -0.20 0.91 -2.06 1.54 1.00
#> abbreviationPlantHealthProgress -0.16 0.92 -2.02 1.58 1.00
#> abbreviationPlantPathol -0.26 0.90 -2.06 1.45 1.00
#> abbreviationRevMexFitopatol -0.24 0.91 -2.09 1.48 1.00
#> abbreviationTropPlantPathol 0.64 0.87 -1.13 2.27 1.00
#> abbreviationVirolJ -0.16 0.93 -2.03 1.59 1.00
#> Bulk_ESS Tail_ESS
#> Intercept[1] 23466 14789
#> Intercept[2] 25098 15265
#> abbreviationAustralasPlantPath 32536 13882
#> abbreviationCanJPlantPathol 28906 12604
#> abbreviationCropProt 31134 13944
#> abbreviationEurJPlantPathol 31650 14673
#> abbreviationForestPathol 31718 14060
#> abbreviationJPhytopathol 32742 14361
#> abbreviationJPlantPathol 31789 13539
#> abbreviationMolPlantMicroIn 31388 13555
#> abbreviationMolPlantPathol 31143 14356
#> abbreviationNematology 31326 13327
#> abbreviationPhysiolMolPlantP 31681 14398
#> abbreviationPhytoparasitica 31377 14582
#> abbreviationPhytopatholMediterr 33593 14087
#> abbreviationPlantDis 32494 14433
#> abbreviationPlantHealthProgress 31097 13128
#> abbreviationPlantPathol 33926 14578
#> abbreviationRevMexFitopatol 31184 13966
#> abbreviationTropPlantPathol 30951 14357
#> abbreviationVirolJ 31478 13751
#>
#> Family Specific Parameters:
#> Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> disc 1.00 0.00 1.00 1.00 NA NA NA
#>
#> Draws were sampled using sampling(NUTS). For each parameter, Bulk_ESS
#> and Tail_ESS are effective sample size measures, and Rhat is the potential
#> scale reduction factor on split chains (at convergence, Rhat = 1).
plot(m_f1)
pp_check(m_f1, ndraws = 50, type = "bars")
plot(equivalence_test(m_f1))
#> Picking joint bandwidth of 0.0973
#> Warning: Removed 21000 rows containing non-finite values
#> (`stat_density_ridges()`).
pander(m_f1_report <- report(m_f1))
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Start sampling
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
_We fitted a Bayesian logistic mixed model (estimated using MCMC
sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.03,
95% CI [4.62e-04, 0.09]) and the part related to the fixed effects alone
(marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._ and _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict comp_mthds_avail with abbreviation (formula: comp_mthds_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as student_t (location =
0.00, scale = 2.50) distributions. The model’s explanatory power is weak
(R2 = 0.03, 95% CI [4.62e-04, 0.09]) and the part related to the fixed
effects alone (marginal R2) is of 0.43 (95% CI [0.35, 0.48]). Within
this model:
- The effect of b Intercept[1] (Median = 0.16, 95% CI [-1.37, 1.71])
has a 58.41% probability of being positive (> 0), 55.79% of being
significant (> 0.05), and 43.03% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 32339)
- The effect of b Intercept[2] (Median = 0.55, 95% CI [-0.97, 2.09])
has a 75.78% probability of being positive (> 0), 73.61% of being
significant (> 0.05), and 62.57% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 28516)
- The effect of b abbreviationAustralasPlantPath (Median = -0.13, 95%
CI [-2.02, 1.67]) has a 55.28% probability of being negative (< 0),
53.23% of being significant (< -0.05), and 42.58% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30612)
- The effect of b abbreviationCanJPlantPathol (Median = -0.18, 95% CI
[-2.08, 1.56]) has a 57.66% probability of being negative (< 0),
55.65% of being significant (< -0.05), and 45.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31234)
- The effect of b abbreviationCropProt (Median = -0.22, 95% CI [-2.06,
1.48]) has a 59.97% probability of being negative (< 0), 57.67% of
being significant (< -0.05), and 46.49% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 31202)
- The effect of b abbreviationEurJPlantPathol (Median = -0.19, 95% CI
[-2.04, 1.52]) has a 57.98% probability of being negative (< 0),
55.71% of being significant (< -0.05), and 44.92% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32113)
- The effect of b abbreviationForestPathol (Median = -0.19, 95% CI
[-2.06, 1.52]) has a 57.94% probability of being negative (< 0),
55.88% of being significant (< -0.05), and 45.62% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31482)
- The effect of b abbreviationJPhytopathol (Median = -0.31, 95% CI
[-2.07, 1.28]) has a 64.34% probability of being negative (< 0),
61.95% of being significant (< -0.05), and 50.65% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30985)
- The effect of b abbreviationJPlantPathol (Median = -0.21, 95% CI
[-2.07, 1.49]) has a 59.15% probability of being negative (< 0),
56.92% of being significant (< -0.05), and 46.06% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30646)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.49, 95% CI
[-1.26, 2.05]) has a 71.93% probability of being positive (> 0),
69.89% of being significant (> 0.05), and 58.91% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 30840)
- The effect of b abbreviationMolPlantPathol (Median = -0.26, 95% CI
[-2.06, 1.39]) has a 61.27% probability of being negative (< 0),
59.21% of being significant (< -0.05), and 48.47% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30942)
- The effect of b abbreviationNematology (Median = -0.20, 95% CI
[-2.05, 1.52]) has a 58.95% probability of being negative (< 0),
56.93% of being significant (< -0.05), and 46.09% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30868)
- The effect of b abbreviationPhysiolMolPlantP (Median = -0.22, 95% CI
[-2.07, 1.45]) has a 59.88% probability of being negative (< 0),
57.84% of being significant (< -0.05), and 46.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32950)
- The effect of b abbreviationPhytoparasitica (Median = -0.24, 95% CI
[-2.04, 1.41]) has a 60.77% probability of being negative (< 0),
58.63% of being significant (< -0.05), and 47.15% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 32161)
- The effect of b abbreviationPhytopatholMediterr (Median = -0.19, 95%
CI [-2.04, 1.54]) has a 58.04% probability of being negative (< 0),
55.94% of being significant (< -0.05), and 45.55% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30622)
- The effect of b abbreviationPlantDis (Median = -0.19, 95% CI [-2.06,
1.54]) has a 58.36% probability of being negative (< 0), 56.17% of
being significant (< -0.05), and 44.76% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 33692)
- The effect of b abbreviationPlantHealthProgress (Median = -0.15, 95%
CI [-2.02, 1.58]) has a 56.54% probability of being negative (< 0),
54.37% of being significant (< -0.05), and 43.46% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31375)
- The effect of b abbreviationPlantPathol (Median = -0.24, 95% CI
[-2.06, 1.45]) has a 60.29% probability of being negative (< 0),
58.22% of being significant (< -0.05), and 47.57% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 30525)
- The effect of b abbreviationRevMexFitopatol (Median = -0.22, 95% CI
[-2.09, 1.48]) has a 59.81% probability of being negative (< 0),
57.70% of being significant (< -0.05), and 46.63% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 31373)
- The effect of b abbreviationTropPlantPathol (Median = 0.66, 95% CI
[-1.13, 2.27]) has a 77.35% probability of being positive (> 0),
75.55% of being significant (> 0.05), and 66.25% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23414)
- The effect of b abbreviationVirolJ (Median = -0.14, 95% CI [-2.03,
1.59]) has a 56.07% probability of being negative (< 0), 53.86% of
being significant (< -0.05), and 42.80% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25011)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._
Data Availability
Test the effect that the journal may have on the availability of
data. Base level is set to Phytopathology, the journal that
will be used as the intercept in the following model.
# reimport data due to changes in previous model dropping NA values
rrpp <- import_notes()
rrpp <-
within(rrpp,
abbreviation <-
relevel(abbreviation, ref = "Phytopathology"))
rrpp <- drop_na(rrpp, data_avail)
m_f2 <-
brm(
formula = data_avail ~ abbreviation +
(1 | assignee),
data = rrpp,
seed = 27,
prior = priors,
family = cumulative(),
iter = 10000,
control = list(adapt_delta = 0.99)
)
#> Compiling Stan program...
#> Start sampling
summary(m_f2)
#> Family: cumulative
#> Links: mu = logit; disc = identity
#> Formula: data_avail ~ abbreviation + (1 | assignee)
#> Data: rrpp (Number of observations: 448)
#> Draws: 4 chains, each with iter = 10000; warmup = 5000; thin = 1;
#> total post-warmup draws = 20000
#>
#> Group-Level Effects:
#> ~assignee (Number of levels: 5)
#> Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sd(Intercept) 2.46 1.35 0.47 5.70 1.00 3966 3612
#>
#> Population-Level Effects:
#> Estimate Est.Error l-95% CI u-95% CI Rhat
#> Intercept[1] 0.40 0.69 -0.95 1.71 1.00
#> Intercept[2] 0.68 0.69 -0.67 1.97 1.00
#> Intercept[3] 1.14 0.69 -0.21 2.44 1.00
#> abbreviationAustralasPlantPath 0.60 0.64 -0.69 1.81 1.00
#> abbreviationCanJPlantPathol 0.28 0.55 -0.85 1.33 1.00
#> abbreviationCropProt -1.27 0.70 -2.75 0.01 1.00
#> abbreviationEurJPlantPathol 0.06 0.58 -1.14 1.15 1.00
#> abbreviationForestPathol -0.12 0.57 -1.28 0.95 1.00
#> abbreviationJPhytopathol -0.27 0.47 -1.24 0.62 1.00
#> abbreviationJPlantPathol 0.14 0.54 -0.97 1.14 1.00
#> abbreviationMolPlantMicroIn 0.53 0.48 -0.45 1.46 1.00
#> abbreviationMolPlantPathol 0.92 0.42 0.10 1.73 1.00
#> abbreviationNematology -0.21 0.62 -1.49 0.94 1.00
#> abbreviationPhysiolMolPlantP 0.58 0.47 -0.38 1.47 1.00
#> abbreviationPhytoparasitica -0.49 0.58 -1.70 0.59 1.00
#> abbreviationPhytopatholMediterr 1.67 0.46 0.77 2.57 1.00
#> abbreviationPlantDis -1.29 0.69 -2.74 -0.03 1.00
#> abbreviationPlantHealthProgress -0.62 0.68 -2.01 0.64 1.00
#> abbreviationPlantPathol -0.10 0.48 -1.09 0.82 1.00
#> abbreviationRevMexFitopatol -1.17 0.70 -2.61 0.13 1.00
#> abbreviationTropPlantPathol 0.34 0.55 -0.77 1.38 1.00
#> abbreviationVirolJ 0.86 0.45 -0.02 1.73 1.00
#> Bulk_ESS Tail_ESS
#> Intercept[1] 5436 5371
#> Intercept[2] 5478 5361
#> Intercept[3] 5611 5672
#> abbreviationAustralasPlantPath 24496 14785
#> abbreviationCanJPlantPathol 22543 14189
#> abbreviationCropProt 23705 12422
#> abbreviationEurJPlantPathol 20390 13867
#> abbreviationForestPathol 21014 13168
#> abbreviationJPhytopathol 19218 14636
#> abbreviationJPlantPathol 20756 13396
#> abbreviationMolPlantMicroIn 18388 14692
#> abbreviationMolPlantPathol 17285 15199
#> abbreviationNematology 24110 13773
#> abbreviationPhysiolMolPlantP 19145 13475
#> abbreviationPhytoparasitica 22760 14177
#> abbreviationPhytopatholMediterr 19560 15257
#> abbreviationPlantDis 25415 13170
#> abbreviationPlantHealthProgress 23033 12837
#> abbreviationPlantPathol 19981 14407
#> abbreviationRevMexFitopatol 26372 13839
#> abbreviationTropPlantPathol 22973 14035
#> abbreviationVirolJ 19053 14538
#>
#> Family Specific Parameters:
#> Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> disc 1.00 0.00 1.00 1.00 NA NA NA
#>
#> Draws were sampled using sampling(NUTS). For each parameter, Bulk_ESS
#> and Tail_ESS are effective sample size measures, and Rhat is the potential
#> scale reduction factor on split chains (at convergence, Rhat = 1).
plot(m_f2)
pp_check(m_f1, ndraws = 50, type = "bars")
plot(equivalence_test(m_f2), range = c(-0.1, 0.1))
#> Picking joint bandwidth of 0.0631
#> Warning: Removed 22000 rows containing non-finite values
#> (`stat_density_ridges()`).
pander(m_f2_report <- report(m_f2))
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Start sampling
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
#> Warning: Predictions are treated as continuous variables in 'bayes_R2' which is
#> likely invalid for ordinal families.
_We fitted a Bayesian logistic mixed model (estimated using MCMC
sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._, _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as normal (mean = 0.00, SD
= 1.00) distributions. The model’s explanatory power is weak (R2 = 0.12,
95% CI [0.07, 0.17]) and the part related to the fixed effects alone
(marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._ and _We fitted a Bayesian logistic mixed model (estimated using
MCMC sampling with 4 chains of 10000 iterations and a warmup of 5000) to
predict data_avail with abbreviation (formula: data_avail ~
abbreviation). The model included assignee as random effect (formula: ~1
| assignee). Priors over parameters were set as student_t (location =
0.00, scale = 2.50) distributions. The model’s explanatory power is weak
(R2 = 0.12, 95% CI [0.07, 0.17]) and the part related to the fixed
effects alone (marginal R2) is of 0.20 (95% CI [0.08, 0.28]). Within
this model:
- The effect of b Intercept[1] (Median = 0.39, 95% CI [-0.95, 1.71])
has a 71.00% probability of being positive (> 0), 68.58% of being
significant (> 0.05), and 55.44% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 24307)
- The effect of b Intercept[2] (Median = 0.67, 95% CI [-0.67, 1.97])
has a 83.41% probability of being positive (> 0), 81.48% of being
significant (> 0.05), and 70.22% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22129)
- The effect of b Intercept[3] (Median = 1.14, 95% CI [-0.21, 2.44])
has a 95.07% probability of being positive (> 0), 94.28% of being
significant (> 0.05), and 88.81% of being large (> 0.30). The
estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 22755)
- The effect of b abbreviationAustralasPlantPath (Median = 0.61, 95%
CI [-0.69, 1.81]) has a 82.82% probability of being positive (> 0),
80.87% of being significant (> 0.05), and 68.98% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19981)
- The effect of b abbreviationCanJPlantPathol (Median = 0.30, 95% CI
[-0.85, 1.33]) has a 70.03% probability of being positive (> 0),
66.95% of being significant (> 0.05), and 50.09% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20503)
- The effect of b abbreviationCropProt (Median = -1.24, 95% CI [-2.75,
7.42e-03]) has a 97.39% probability of being negative (< 0), 96.73%
of being significant (< -0.05), and 92.35% of being large (<
-0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 18975)
- The effect of b abbreviationEurJPlantPathol (Median = 0.07, 95% CI
[-1.14, 1.15]) has a 55.05% probability of being positive (> 0),
51.74% of being significant (> 0.05), and 34.60% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 20369)
- The effect of b abbreviationForestPathol (Median = -0.10, 95% CI
[-1.28, 0.95]) has a 57.38% probability of being negative (< 0),
53.86% of being significant (< -0.05), and 36.08% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 18290)
- The effect of b abbreviationJPhytopathol (Median = -0.26, 95% CI
[-1.24, 0.62]) has a 71.38% probability of being negative (< 0),
67.54% of being significant (< -0.05), and 46.72% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 17388)
- The effect of b abbreviationJPlantPathol (Median = 0.15, 95% CI
[-0.97, 1.14]) has a 61.16% probability of being positive (> 0),
57.51% of being significant (> 0.05), and 38.76% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 23521)
- The effect of b abbreviationMolPlantMicroIn (Median = 0.54, 95% CI
[-0.45, 1.46]) has a 85.83% probability of being positive (> 0),
83.45% of being significant (> 0.05), and 68.72% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19047)
- The effect of b abbreviationMolPlantPathol (Median = 0.92, 95% CI
[0.10, 1.73]) has a 98.45% probability of being positive (> 0),
97.98% of being significant (> 0.05), and 93.24% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 22298)
- The effect of b abbreviationNematology (Median = -0.19, 95% CI
[-1.49, 0.94]) has a 62.43% probability of being negative (< 0),
59.28% of being significant (< -0.05), and 43.24% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19528)
- The effect of b abbreviationPhysiolMolPlantP (Median = 0.58, 95% CI
[-0.38, 1.47]) has a 89.03% probability of being positive (> 0),
86.84% of being significant (> 0.05), and 72.77% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 24518)
- The effect of b abbreviationPhytoparasitica (Median = -0.47, 95% CI
[-1.70, 0.59]) has a 80.02% probability of being negative (< 0),
77.43% of being significant (< -0.05), and 62.00% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22228)
- The effect of b abbreviationPhytopatholMediterr (Median = 1.67, 95%
CI [0.77, 2.57]) has a 100.00% probability of being positive (> 0),
99.99% of being significant (> 0.05), and 99.87% of being large (>
0.30). The estimation successfully converged (Rhat = 1.000) and the
indices are reliable (ESS = 19747)
- The effect of b abbreviationPlantDis (Median = -1.26, 95% CI [-2.74,
-0.03]) has a 97.78% probability of being negative (< 0), 97.30% of
being significant (< -0.05), and 93.25% of being large (< -0.30).
The estimation successfully converged (Rhat = 1.000) and the indices are
reliable (ESS = 25620)
- The effect of b abbreviationPlantHealthProgress (Median = -0.59, 95%
CI [-2.01, 0.64]) has a 81.71% probability of being negative (< 0),
79.61% of being significant (< -0.05), and 67.05% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 22569)
- The effect of b abbreviationPlantPathol (Median = -0.09, 95% CI
[-1.09, 0.82]) has a 57.23% probability of being negative (< 0),
53.49% of being significant (< -0.05), and 33.36% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.000) and
the indices are reliable (ESS = 19006)
- The effect of b abbreviationRevMexFitopatol (Median = -1.14, 95% CI
[-2.61, 0.13]) has a 95.84% probability of being negative (< 0),
95.03% of being significant (< -0.05), and 89.44% of being large
(< -0.30). The estimation successfully converged (Rhat = 1.001) and
the indices are reliable (ESS = 5505)
- The effect of b abbreviationTropPlantPathol (Median = 0.36, 95% CI
[-0.77, 1.38]) has a 74.23% probability of being positive (> 0),
71.45% of being significant (> 0.05), and 54.52% of being large (>
0.30). The estimation successfully converged (Rhat = 1.001) and the
indices are reliable (ESS = 5549)
- The effect of b abbreviationVirolJ (Median = 0.87, 95% CI [-0.02,
1.73]) has a 97.17% probability of being positive (> 0), 96.39% of
being significant (> 0.05), and 89.52% of being large (> 0.30).
The estimation successfully converged (Rhat = 1.001) and the indices are
reliable (ESS = 5691)
Following the Sequential Effect eXistence and sIgnificance Testing
(SEXIT) framework, we report the median of the posterior distribution
and its 95% CI (Highest Density Interval), along the probability of
direction (pd), the probability of significance and the probability of
being large. The thresholds beyond which the effect is considered as
significant (i.e., non-negligible) and large are |0.05| and |0.30|.
Convergence and stability of the Bayesian sampling has been assessed
using R-hat, which should be below 1.01 (Vehtari et al., 2019), and
Effective Sample Size (ESS), which should be greater than 1000 (Burkner,
2017)._