All functions

P_sojae_survey

Phytophthora sojae Survey Example Data

autoplot(<hagis.complexities>)

Plot hagis Complexities Objects

autoplot(<hagis.gene.summary>)

Plot hagis Summary Objects

calculate_complexities()

Calculate Distribution of Complexities by Sample

calculate_diversities()

Calculate Diversities Indices

create_binary_matrix()

Create Binary Data Matrix From Pathotype Data

diversities_table()

Custom Print for hagis Diversities Tables

individual_pathotypes()

Prints Individual Pathotypes for Each Sample

sample_meta

Phytophthora sojae Survey Example Metadata

summarize_gene()

Calculate and Summarize Distribution of Susceptibilities by Gene