All functions

P_sojae_survey

Phytophthora sojae survey example data

autoplot(<hagis.complexities>)

Plot hagis complexities objects

autoplot(<hagis.gene.summary>)

Plot hagis summary objects

calculate_complexities()

Calculate distribution of complexities by sample

calculate_diversities()

Calculate diversities indices

create_binary_matrix()

Create binary data matrix

diversities_table()

Prints table of diversities

individual_pathotypes()

Prints individual pathotypes for each sample

sample_meta

Phytophthora sojae survey example metadata

summarize_gene()

Calculate and summarize distribution of susceptibilities by gene