Creates a ggplot2 object of the gene summaries
calculated by summarize_gene()
# S3 method for hagis.gene.summary
autoplot(object, type, color = NULL, order = NULL, ...)
a hagis.gene.summary
object generated by summarize_gene()
.
Character
.
a vector of values for which the bar plot is desired. Specify
whether to return a graph of the percent pathogenic isolates, percentage
,
or as the count, count
. Character
.
a named or hexadecimal color value to use for the bar color
sort the x-axis of the bar chart by ascending or descending
order of N_virulent_isolates
or percent_pathogenic
. Accepts ascending
or descending
input values. Defaults to gene
name. Character
.
passed to the chosen geom(s)
A ggplot2 plot
if (FALSE) { # interactive()
# Using the built-in data set, `P_sojae_survey`
data(P_sojae_survey)
# calculate susceptibilities with a 60 % cutoff value
susc <- summarize_gene(x = P_sojae_survey,
cutoff = 60,
control = "susceptible",
sample = "Isolate",
gene = "Rps",
perc_susc = "perc.susc")
# Visualize the summary of genes
autoplot(susc, type = "percentage")
}