Creates a ggplot2 object of the frequency of
complexity (percent per complexity) or a ggplot2 object of the
distribution (number per complexity) calculated by
`calculate_complexities()`

.

```
# S3 method for hagis.complexities
autoplot(object, type, color = NULL, order = NULL, ...)
```

- object
a hagis

`complexities`

object generated by`calculate_complexities()`

.`Character`

.- type
a vector of values for which the bar plot is desired. Specify whether to return a graph of the frequency of complexities as a percentage, "

`percentage`

", or as the count, "`count`

".`Character`

.- color
a named or hexadecimal color value to use for the bar color

- order
sort the x-axis of the bar chart by ascending or descending order of

`frequency`

. Accepts`ascending`

or`descending`

input values. Defaults to`complexity`

value.`Character`

.- ...
passed to the chosen

`geom(s)`

A ggplot2 object

```
if (FALSE) { # interactive()
# Using the built-in data set, `P_sojae_survey`
data(P_sojae_survey)
# calculate susceptibilities with a 60 % cutoff value
complexities <- calculate_complexities(x = P_sojae_survey,
cutoff = 60,
control = "susceptible",
sample = "Isolate",
gene = "Rps",
perc_susc = "perc.susc")
# Visualize the distribution (count or actual values)
autoplot(complexities, type = "count")
# Visualize the frequency (percentages)
autoplot(complexities, type = "percentage")
}
```